SE3320241

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7706
  • citrus sinensis
  • SE3320241
  • Mutator
  • M18
  • chrUn:64366834-64367287
  • TAAATAAAA
  • AGGGAAATTATCATTTTACTATTAAAGTTTTACTGACATATCATGTCAATACCAATATTTGCCGAAAAATATATTTTACTACTAAAATTTTACACCGTTATCAATTCACTACCATTCCGTTAAGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAATAAA     A           A       A                      A   C  TA           A                      A A C                           G  AAA     TATTTAACGAAAATTAAGTTAAAAGTCGATTTTACCCCTAAGAGTTTGGTAGTAAAATAATAATTCCCCTAAAAACTTGATAGTAA
        AGGGA ATTATCATTTT CTATTAA GTTTTACTGACATATCATGTCA TAC AA  TTTGCCGAAAA TATATTTTACTACTAAAATTTT C C GTTATCAATTCACTACCATTCCGTTAA AA   GTTAA                                                                                      
        ||||| ||||||||||| ||||||| |||||||||||||||||||||| ||| ||  ||||||||||| |||||||||||||||||||||| | | ||||||||||||||||||||||||||| ||   |||||                                                                                       
        TCCCT TAATAGTAAAA GATGATT CAAAATGACTGTATAGTACAGT ATG TT  AAATGGCTTTT ATATAAAATGATGATTTTAAAA G G CAATAGTTAAGTGATGGTAAGGCAATT TT   CAATT                                                                                      
AAAATAAA     A           C       A                      C   A  CC           C                      C C T                           G  --G     TTCAAACAACTACAGTATTCTCATAGTTTCTATAAAGGTCGACATTCTCATTTTAATAAACAATTAAATTATCTATTTAATAGTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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