SE3320280

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7745
  • citrus sinensis
  • SE3320280
  • Mutator
  • M2
  • chr6:3348581-3348800
  • TTAAAAAAT
  • GAGTAATGATACAGCCACAAACTATTGTACAAACTTATTTTGTACAAATTGAGGTGGCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAAAAAT           C           A                            G       TAATCC           GA      AAATTAATAAAA   AA
         GAGTAATGATA AGCCACAAACT TTGTACAAACTTATTTTGTACAAATTGA GTGGCAT      ATTGGTTGAAT  AAATAT            ACA  
         ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||      |||||||||||  ||||||            |||  T
         CTCATTACTAT TCGGTGTTTGA AACATGTTTGAATAAAACATGTTTGACT CACCGTA      TAACCAACTTA  TTTATA            TGT  
TAAAAAATT           A           G                            G       CTATTC           -A      --GTGAACCGAG   AC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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