SE3320292

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7757
  • citrus sinensis
  • SE3320292
  • Mutator
  • M54
  • chr1:10219533-10219731
  • CAAAATCAA
  • GAAAAATTTTAAAATGCGTCAGAGGTATTATGTCAGTCATATA

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAAATCAAG  A        A       C       TT   T      TA  --    GTAAATTATCCTACAAAATGCGTGCATTTATTTTAAAAATTCAT
          GA AAATTTTA AATGCGT AGAGGTA  ATG CAGTCA  TA  AGGA                                            
          || |||||||| ||||||| |||||||  ||| ||||||  ||  ||||                                             
          CT TTTAAGAT TTATGTA TTTTCAT  TAT GTCGGT  AT  TGTA                                            
 GAACAAAAA  C        C       -       --   -      TG  TA    TATATTGTACACATAAATCTAAATTATATTGATGGTGAACGTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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