SE3320310

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7775
  • citrus sinensis
  • SE3320310
  • Mutator
  • M14
  • chr5:10651146-10651801
  • TAAAAAAGG
  • AAAGGGATATTATCATTTTCCCACCTAAGGTATTCTGACACATCATGTCAGTACCACGGTTTGGTAAAACTATCAATTTACCACCAAACGTTTAAACTGTTAGCATTTTCCCACAATTCCGTTAAAACTCAGTTAATATGTAACGGAAAATTTCTAAAAGGTCAATTTTACCCCTGGAGTATAAAAAATCATGTAATTAACCTTTTATGAATTTTGTAATTAAATCATCATTTGTTGTTCTTCATTTTTAAAGGACAAAAATTACCATTTATGAATTTTGTAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TAAA                   C     T                                                                                                     C  A                      C                   C      A     A                                                        A                      A                 AT      TGTGGTATTAGGTACTTCATAAATTGATTTAA
    AAAGGGATATTATCATTTT CCACC AAGGTATTCTGACACATCATGTCAGTACCACGGTTTGGTAAAACTATCAATTTACCACCAAACGTTTAAACTGTTAGCATTTTCCCACAATTCCGTTAAAA TC GTTAATATGTAACGGAAAATTT TAAAAGGTCAATTTTACCC TGGAGT TAAAA ATCATGTAATTAACCTTTTATGAATTTTGTAATTAAATCATCATTTGTTGTTCTTC TTTTTAAAGGACAAAAATTACC TTTATGAATTTTGTAAA  TGACCG                                
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||  ||||||                                T
    TTTCCCTATAATAGTAAAA GGTGG TTCCATAAGACTGTGTAGTACAGTCATGGTGCCAAACCATTTTGATAGTTAAATGGTGGTTTGCAAATTTGATAATCGTAAAAGGGTGTTAAGGCAATTTT AG CAATTATACATTGTCTTTTAAG ATTTTCCAGTTAAAATGGG ACTTCA ATTTT TGGTACATTAATTGGAAAATACTTAAAACATTAATTTAGTAGTAAACAACAAGAAG AAGAATTTCCTGTTTTTAATGG AAATATTTAAAACATTT  TTAAAT                                
AAAA                   A     T                                                                                                     A  G                      T                   A      C     C                                                        G                      G                 -G      TATTTATTTAAACTGGAAATTTTTAATTTATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End