Plant MITE

SE3320320

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7785
citrus sinensis
SE3320320
Mutator
M47
chr5:32247100-32247237
TTAAAACAA
A

Secondary structure and sequence

TSD TIR

5'

3'

TTAAAACA    AGATGCTACCTTACGTTAAACGTAAGGTACAATCCTCTCTACAGTAATGGGTCCCAC
        AGAG                                                         
        ||||                                                         T
        TTCG                                                         
 AATAAAA    CAAACGGATGGAATGCAAATTCCATGTCGGAAGAGTGTGTTGACTCTTCACCCAAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320320

TTAAAACAAGAGAGATGCTACCTTACGTTAAACGTAAGGTACAATCCTCTCTACAGTAATGGGTCCCACTAGAACCCACTTCTCAGTTGTGTGAGAAGGCTGTACCTTAAACGTAAGGTAGGCAAACGCTTAAAATAA

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