Plant MITE

SE3320323

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7788
citrus sinensis
SE3320323
Mutator
M6
chr7:1924795-1924964
TATTAAGAG
TTAAGAGGGACCTGTCTATGGTACAGATTCTGTAA

Secondary structure and sequence

TSD TIR

5'

3'

 TA    GA     C  T   TGG      T       CAAAT   TC   TCATCCCACCATCCGATTTTCTATTGCTTAATTTCTCA
   TTAA  GGGAC TG CTA   TACAGA TCTGTAA     ATC  CCG                                      
   ||||  ||||| || |||   |||||| |||||||     |||  |||                                      C
   AATT  TCCTG AC GAT   ATGTCT AGACATT     CGA  TGT                                      
GAG    -A     A  T   CGA      T       -----   --   CTGACGTCGTAGTCGGCAACCTACACCAATCTACACCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320323

TATTAAGAGGGACCTGTCTATGGTACAGATTCTGTAACAAATATCTCCCGTCATCCCACCATCCGATTTTCTATTGCTTAATTTCTCACTCCACATCTAACCACATCCAACGGCTGATGCTGCAGTCTGTAGCTTACAGATTCTGTAAGCTAGTCAAGTCCTATTAAGAG

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