SE3320324

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7789
  • citrus sinensis
  • SE3320324
  • Mutator
  • M57
  • chr7:7222214-7222712
  • TAAATAAAA
  • AGGAAAATTATCCACCGTCCACCTGTTTTTTCTAACTTTTTCAAAAATATACAATTCTTTTTTTTTTGGGC

Secondary structure and sequence

TSD    TIR
5'



3'
TAAATAAA                      CT        TAA                   T            -------GG  TAGAA              -     C    CACTC         C   TG  G       ------A   -  TT     ---- ATAT  --C  AA   ----   TTTTTACCATCAAATATAAAAGATAAATTATTCATCGACCATCTGTTTTTTTCGTATTGTTTCAAAAATACA
        AGGAAAATTATCCACCGTCCAC  GTTTTTTC   CTTTTTCAAAAATATACAA TCTTTTTTTTTT         GC     TCCACCTGAAGTTA CATTT TTTT     GTCCACTTT GTT  GG ACCGTTA       GAA AA  AACGG    A    TG   GT  ATG    ACT                                                                        
        ||||||||||||||||||||||  ||||||||   ||||||||||||||||||| ||||||||||||         ||     |||||||||||||| ||||| ||||     ||||||||| |||  || |||||||       ||| ||  |||||    |    ||   ||  |||    |||                                                                        C
        TCCTTTTAATAGGTGGCAGGTG  CAAAAAAG   GAAAAAGTTTTTATGTGTT AGAAAAAAAAAA         CG     AGGTGGACTTCAAT GTAAA AAAA     CAGGTGAGA CAA  TT TGGCAAT       CAA TG  TAGTA    C    AT   AA  CAG    GTG                                                                        
AAAATAAA                      AC        TGA                   T            AAAAAAAAA  TCGCG              T     A    -TAAC         A   TA  G       CTTAAAA   C  --     TTCC ----  TTT  --   TAAA   CTGTGTCACCACCTGTTCATGTTTTGTTATATTGAAGTTCACCTCAAGTCAGTTTTTTTTTTTAATTCTTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End