SE3320327

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7792
  • citrus sinensis
  • SE3320327
  • Mutator
  • M58
  • chr9:18208687-18209362
  • TTTATTTGG
  • GGGGGTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTATTT     TT  TTATTTAAATA          GT    --       A   C      CCA     TATATATACCTCCAAAAAGTGTAAAAAGTCAAAAATAACCTAAAAAAATCATCTATTTACGTTTGTTTTCTCTCATGACTTCTATATAATAACACAACCAAAGTCGAGTATACTCGACTTTTTACCCGACTTAATTAAAAGGAAAATTTTCATTTCAATTTAAGTCGAGTATTCTCAACCAATTACCGAACTTCAATGAAAAGTCAAGAATTTTTGCTGAATGAATATTGGGTAAAGTTAAATTAAAGTCAGGTATTCTCGACTCTTTAC
       GGGGG  TT           TACCCCATTT  CCTT  AAATGCC AAT TATACC   TTGCA                                                                                                                                                                                                                                                                              
       |||||  ||           ||||||||||  ||||  ||||||| ||| ||||||   |||||                                                                                                                                                                                                                                                                              T
       CCCTC  AA           ATGGGGTAAG  GGAA  TTTATGG TTA ATATGG   TTTTA                                                                                                                                                                                                                                                                              
TTTATTT     TT  -CACACCCTAC          --    GT       G   T      --A     ATATTGTGAGAATTTAAAATGTGTATATATGAGATTTTTTAATCTCTTTCATGTTTTTATTGGTGTTGATTTAGGAGTATTTTGATTTGGGTTGAGGAGCTTCAGCCCATTTACCAGCTCTTATGAGCTGAAGTTGGTTTGGTATGTGTTAATTATTAAGTCGTATTTAAGAGCTGAAAAAGTACAATCAGCCCATTTATCAGCTCTTATGAGCTGAAGTTAATTTTATTTTTTAATAGACTTTTTAAGAACTAAAAAAGTTCATTCAGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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