Plant MITE

SE3360338

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7803
citrus sinensis
SE3360338
Micron
Mim1
chr4:16717383-16717563
TGTCACT
GTCACTATAG

Secondary structure and sequence

TSD TIR

5'

3'

  T  C  T    AGAAATG    -A    GA         ATA         GC AA   TC             A              AAA
   GT AC ATAG       TTTC  GTCA  AATTTTAAA   CGGGAAAGT  G  AAA  TTTAAAATTGTAT GTTTTAAAGGCTTA   
   || || ||||       ||||  ||||  |||||||||   |||||||||  |  |||  ||||||||||||| ||||||||||||||    
   CA TG TATC       AAAG  CAGT  TTAAAATTT   GCCCTTTCA  C  TTT  AAATTTTGGTGTG CAAAATTTCCGAAT   
TAT  C  -    ---ATCA    AC    AC         CAC         GT CC   CA             C              GTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3360338

TGTCACTATAGAGAAATGTTTCAGTCAGAAATTTTAAAATACGGGAAAGTGCGAAAAATCTTTAAAATTGTATAGTTTTAAAGGCTTAAAACTGTAAGCCTTTAAAACCGTGTGGTTTTAAAACTTTCCCTGACTTTCCCGCACTTTAAAATTCATGACCAGAAAACTACTATGTCACTAT

Copy Cancel