SE3320340

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7805
  • citrus sinensis
  • SE3320340
  • Mutator
  • M12
  • chrUn:42815652-42816219
  • TTAAATTAA
  • AATTAAAGGGTAATTTTTAAAAATCTCCCCTGAGGTTTGGGCTTGTTGCAAGTAGATGGCGAGAATTTATTTATTTGTAAAAAACCCCCTACTGTCAGTTAACTTTAACATTGACCGTTAGTTGACTGTGCAAAGACAATATTACCCTTAACAACAGTTTGTAGACGAAAATAACTAAAAAAAAAATAAAATTGTTGGC

Secondary structure and sequence

TSD    TIR
5'



3'
TTA    A                                                                               C C                                                 C                              A              A    -            TATTTT  CCTCTTTAAATTATTGATATTTTCTTAAAGTTCTTACAAGAAAGATAAAATTAAAAACTTGAAAATGAAATAGTTA
   AATT AAGGGTAATTTTTAAAAATCTCCCCTGAGGTTTGGGCTTGTTGCAAGTAGATGGCGAGAATTTATTTATTTGTAAAAAA C CCTACTGTCAGTTAACTTTAACATTGACCGTTAGTTGACTGTGCAAAGA AATATTACCCTTAACAACAGTTTGTAGACG AAATAACTAAAAAA AAAT AAAATTGTTGGC      AC                                                                            
   |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||      ||                                                                            T
   TTAA TTCCCATTAAAAATTTTTGGAGGGGACTCCAAACCCGAACAACGTTTATCTACCGCTCTTAAATAAATAAACATTTTTT G GGATGGCAGTCAATTGAAATTGTAACTGGCAATCAACTGACACGTTTCT TTATAATGGGAATTGTTGTCAAACATCTGC TTTATTGATTTTTT TTTA TTTTAACAACCG      CG                                                                            
AAA    A                                                                               A A                                                 A                              C              C    A            ------  CTTTTCGTGTTTGGGATAAAAAACTGTTAAAATAGGAACAGTTAAGGTTTCTAAATGTTATAGTATCCATTTCTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End