SE3320343

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7808
  • citrus sinensis
  • SE3320343
  • Mutator
  • M32
  • chrUn:73778417-73778853
  • TTCTTATTA
  • AGGGAAATTATCAATCGTATACCCTTAGTTTACTCCGTTATCAAATTTAGTACAATACTTTCAGGGTATATCAGTCGTTCACCCTAAGTTGACAAAATGTATCTGCCGTCCACCAAACCGTTAATTGCCATTT

Secondary structure and sequence

TSD    TIR
5'



3'
TTCTTATT             A                 --A  C GT  TC   TT  G           C     A                        C    TG         T    C    C    A         ----A     GATGACGTCAGAGGGGTAATATGGTCTTTTTATATGATACAAGTGATAATTTTAGGGTATAGAAGTGA
        AGGGAAATTATCA TCGTATACCCTTAGTTT   CT C  TA  AAA  TA TACAATACTTT AGGGT TATCAGTCGTTCACCCTAAGTTGA AAAA  TATCTGCCG CCAC AAAC GTTA TTGCCATTT     ACTAT                                                                    
        ||||||||||||| |||||||||||||||||   || |  ||  |||  || ||||||||||| ||||| |||||||||||||||||||||||| ||||  ||||||||| |||| |||| |||| |||||||||     |||||                                                                    T
        TCCCTTTAATAGT AGCATATGGGAGTTAAA   GA G  AT  TTT  AT ATGTTGTGAAA TCCCA ATAGTTAGTAAGTGGGATTTAACT TTTT  ATAGACGGC GGTG TTTG CAAT GATGGTAAA     AATTG                                                                    
ATTATTCT             A                 CAC  A AT  TT   TT  A           T     C                        T    CA         T    A    A    C         CTTTC     CCTTGACATCGATTAACTGTTAAAATGGGAACTTTTCATAGTGAACATATGGGAATTTTATTGAATAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End