SE3320356

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7821
  • citrus sinensis
  • SE3320356
  • Mutator
  • M12
  • chr7:17811424-17811860
  • AATCTTGAT
  • ATCTTGATCGGGTAATTTTTAAAAACCTCCCCTGAGGTTTAGGCTTGTTGCAAGTAGATGACGAGAATTGATTTATTTGTAAAAAACCCCCTACCGTCAGTT

Secondary structure and sequence

TSD    TIR
5'



3'
A   TT   C                               A                   A                                         -------AA     -------------A  TT   C   A  -------   CC -  CAAAGACAATATTACCCTCAACAATAGTTTGTAAACGAAAATAACTAAAAAAAAACCAAAATTATTAGTGCAAA
 ATC  GAT GGGTAATTTTTAAAAACCTCCCCTGAGGTTT GGCTTGTTGCAAGTAGATG CGAGAATTGATTTATTTGTAAAAAACCCCCTACCGTCAGTT         GTTTA              CA  GAC GTT GT       TGA  G TG                                                                          
 |||  ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||         |||||              ||  ||| ||| ||       |||  | ||                                                                          A
 TAG  CTA CCCATTAAAAATTTTTGGAGGGGACTCCAAA CCGAACAACGTTCATCTAC GCTCTTAACTAAATAAACATTTTTTGGGGGATGGCAGTCAA         GGATG              AT  TTT TAA AT       TTA  T AG                                                                          
C   TT   A                               C                   C                                         GAATTTTAA     TTCTTTCTATTTTA  --   -   -  TTTTACT   -- C  TATTAGAAATGGATACTATAACATTTAAAAATCTTAACTGTTCCTATTTTAACAGTTTTTTATCCCAAACACGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End