SE3320357

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7822
  • citrus sinensis
  • SE3320357
  • Mutator
  • M2
  • chr5:481116-481350
  • ATTTTTTAA
  • GAGTAATGATACAACCACAAACTCTTGTACAAACTTATTTTGTACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTTTTTAA             A CAC                             ACTTATTTTGTAAAA     C                        GA      AAATTAATAAAA   AA
         GAGTAATGATACA C   AAACTCTTGTACAAACTTATTTTGTACAA               ACTGA GTGGCATGATAAGATTGGTTGAAT  AAATAT            ACA  
         ||||||||||||| |   |||||||||||||||||||||||||||||               ||||| ||||||||||||||||||||||||  ||||||            |||  T
         CTCATTACTATGT G   TTTGAGAACATGTTTGAATAAAACATGTT               TGACT CACCGTACTATTCTAACCAACTTA  TTTATA            TGT  
AATTTTTTA             C ATA                             ---------------     A                        -A      --GTGAACCGGG   AT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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