SE3320366

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7831
  • citrus sinensis
  • SE3320366
  • Mutator
  • M21
  • chrUn:39928097-39928256
  • TTGATCTTG
  • GATCTTGGGGTCCAGTTATGTTTGCAACAGTGGTATGGTACCACTGTTGCTTTCAGCCGTTGGATCT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TT    TT     CC         T        G            T     TT               TACTAAT      GT
   GATC  GGGGT  AGTTATGTT GCAACAGT GTATGGTACCAC GTTGC  TCAGCCGTTGGATCT       GTAATT  
   ||||  |||||  ||||||||| |||||||| |||||||||||| |||||  |||||||||||||||       ||||||   
   CTAG  TCCCG  TTGATACAA CGTTGTCA CATACTATGGTG CAACG  GGTCGGTAACCTAGA       TATTAA  
GTT    -T     TT         -        A            T     TT               -------      TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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