Plant MITE

SE3360371

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7836
citrus sinensis
SE3360371
Micron
Mim1
chr1:3392657-3392843
TATATAT
ATATATATATGAG

Secondary structure and sequence

TSD TIR

5'

3'

T          G  AAATG   CA  C   A                  ATA       C    T               A        AAA
 ATATATATAT AG     TTC  GT AGG ATTTTAAAGTGTGGGAAA   CGGGAAA CTTT AAACCGCATGGTTTT AAGGTTTA   
 |||||||||| ||     |||  || ||| ||||||||||||||||||   ||||||| |||| ||||||||||||||| ||||||||    
 TATATATATA TC     AAG  TA TCC TAAAATTTCACGCCCTTT   GCCCTTT GAAA TTTGGTGTGCCGAAA TTCCGAAT   
           -  ATCAA   AC  T   C                  CAG       C    T               C        GTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3360371

TATATATATATGAGAAATGTTCCAGTCAGGAATTTTAAAGTGTGGGAAAATACGGGAAACCTTTTAAACCGCATGGTTTTAAAGGTTTAAAACTGTAAGCCTTCAAAGCCGTGTGGTTTTAAAGCTTTCCCGGACTTTCCCGCACTTTAAAATCCCTTATCAGAAAACTACTATATATATAT

Copy Cancel