SE3320376

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7841
  • citrus sinensis
  • SE3320376
  • Mutator
  • M32
  • chrUn:11066608-11067041
  • TTTTTTCTT
  • GGGAAATTATCATTCATATACCTTATAGATGCTTTGTTATCAAAAATACTACAACACTTTGATGGTGTATCAATCGTCCACCCTAAGTTGACAAAATGTATCTGCCGTCCACCAAACTGTTACTTGCCATTTAAATAGGATAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTTCTT    A          A                        C             C    T  T   G                             TG         T              C     A   -  -----         ---C     ---  GGGTATTTTGGTCTTTTCATATGATGCAAGTGATAATTTAAGGGTATACAA
         GGGA ATTATCATTC TATACCTTATAGATGCTTTGTTAT AAAAATACTACAA ACTT GA GGT TATCAATCGTCCACCCTAAGTTGACAAAA  TATCTGCCG CCACCAAACTGTTA TTGCC TTT AA     ATAGGATAA    GCCAG   AG                                                   
         |||| |||||||||| |||||||||||||||||||||||| ||||||||||||| |||| || ||| |||||||||||||||||||||||||||||  ||||||||| |||||||||||||| ||||| ||| ||     |||||||||    |||||   ||                                                   G
         CCCT TAATAGTAAG ATATGGGATATCTACGAGACAATA TTTTTATGATGTT TGAA CT CTA ATAGTTAGCAGGTGGGATTTAACTGTTTT  ATAGACGGC GGTGGTTTGGCAAT GATGG AAA TT     TGTCTTATT    CTTAA   CT                                                   
TTCTTTTTT    A          C                        T             A    -  C   A                             CG         T              C     C   C  TCAAC         ATCA     CTA  AAAATGGGAACTTTTAATAGTGAACATATGGGAATTTAAGAAAATAATAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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