SE3330377

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7842
  • citrus sinensis
  • SE3330377
  • hAT
  • Hat4
  • chr1:4470883-4471242
  • ATTATCAT
  • ATCAGTGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTATC     T   ATAT     AAAATAATTTACCGGTGACTATATCAAATAATAGTAAAACATAAAAACTGAAAACTTGAATTTTTTTTTTTTGATTTAATGCAATCTCTAGTTACACCCACAATTCAATAATTAGGAATTATAAATATTTTTGGTTGTGCGCTTTGATTTTTAAGTC
      ATCAG GGC    GTAGA                                                                                                                                                             
      ||||| |||    |||||                                                                                                                                                              
      TAGTC CCG    TAAGT                                                                                                                                                             
TACTAT     T   --CC     GATATCCTGGTGACCCCCGAGTTCAGGGGTGACCTTTTTTTTTAGAGATAAAGAATTTTTTTTAATTGTATAAAGATTTATCAGAACAGTTTAATAATCTATCGGGGTAGGAAATTTTAAATTTGATAATAAAATAATTAATGTTTTCAATATGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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