Plant MITE

SE3320400

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7865
citrus sinensis
SE3320400
Mutator
M2
chr2:14147546-14147750
ATAGCAAAA
GC

Secondary structure and sequence

TSD TIR

5'

3'

 ATA  AAAA                     A             TATTTTGTACAAATT          GATAA            -----------------      TC  T  GT
    GC    GAGTAATGATATAGTCACAAA TCTTGTACAAACT               GATGTGGCAT     AATTGGTTGAAT                 TAAATA  TC TG  
    ||    ||||||||||||||||||||| |||||||||||||               ||||||||||     ||||||||||||                 ||||||  || ||  C
    CG    CTCATTACTATGTCAGTGTTT AGAGCATGTTTGA               CTACATTGTA     TTAACCAACTTA                 ATTTAT  AG AC  
AAAA  -ATA                     G             ---------------          ATTAA            CTTTTATGTTTTATTAT      TT  T  AC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320400

ATAGCAAAAGAGTAATGATATAGTCACAAAATCTTGTACAAACTTATTTTGTACAAATTGATGTGGCATGATAAAATTGGTTGAATTAAATATCTCTTGGTCCACATGATTTATTTATATTATTTTGTATTTTCATTCAACCAATTAATTAATGTTACATCAGTTTGTACGAGAGTTTGTGACTGTATCATTACTCATAGCAAAA

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