SE3320409

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7874
  • citrus sinensis
  • SE3320409
  • Mutator
  • M31
  • chrUn:21333633-21334144
  • TTAAAATTA
  • AGGGAAATTATCAGTCATATACCCTTAAATGACACCAGTATCAAACGTGCTACAACACTTTTCAAGTGTATCACTCGTATCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAAATT                                   C             C             AAG              -  ---   --      CT   ATTTTTTATGGTATAATATGTATAATTGTAAATAATATGTTGTTAATAATTTTTTATGGTATAAGATGAATATTTTTTATGGATAATTGTTAATAATATGTACCATTAATAATTCATATTTTTTAATAAAAAATGTATTGTTAATAACA
        AGGGAAATTATCAGTCATATACCCTTAAATGACAC AGTATCAAACGTG TACAACACTTTTC   TGTATCACTCGTAT CC   AAG  CTCAAA  TGA                                                                                                                                                     
        ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||   |||||||||||||| ||   |||  ||||||  |||                                                                                                                                                     A
        TCCCTTTAATAGTCAGTATATGGGAATTTACTGTG TCATAGTTTGCAC ATGTTGTGAAAAG   ACATAGTGAGCATA GG   TCA  TGTTTT  TCA                                                                                                                                                     
ATTAAAAT                                   A             A             CGA              T  GAT   AC      -C   AGACTGCAGGTGGAAAGGCAAATGATGGCAATTCTTGAATTGTCTTAAACTCGTTTTACTGATAAAATGGGAAATTTGAGTTTTACTTCATTTTTTTATTTAAATGGAACTTTTAATTACATTTAAAAGTTATGTGTTAAAAAAAATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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