SE3320410

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7875
  • citrus sinensis
  • SE3320410
  • Mutator
  • M31
  • chr8:2067636-2068070
  • ATTATTTTA
  • GGGATATTATCATTCGTATATTTTATAGATGTTATGTTATTAAAAATACTATAATATTTTGAGGGTGTATCAATCGTCTACCCTAAATTGACAAAACATATCTGTCGACCACCAAACCGTTAGCTGCCGTTTGAAAGTTAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTATTTTA    T                            A                                           C        A         C    C     A              GC           -  -T    -  A   AT  TGAATTGATGATTTTACCCTTAAAAATTATCACTTGTATACCCTTAAATTCTTTTA
         GGGA ATTATCATTCGTATATTTTATAGATGTT TGTTATTAAAAATACTATAATATTTTGAGGGTGTATCAATCGT TACCCTAA TTGACAAAA ATAT TGTCG CCACCAAACCGTTA  TGCCGTTTGAA AG  TAAC GG ATA  AG                                                        
         |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||| ||||| ||||||||||||||  ||||||||||| ||  |||| || |||  ||                                                        T
         CCCT TAATAGTAAGTATATGGGATATCTACGA ACAATAGTTTTTATGATGTTGTGAAACTCCCACATAGTTAGCA GTGGGATT AACTGTTTT TATA ATGGC GGTGGTTTGGCAAT  ACGGCAAATTT TC  ATTG GG TGT  AC                                                        
ATTTTATTA    T                            G                                           A        C         A    T     A              GA           A  CT    C  -   --  CCATTAAACTAGAAAAGTATACTATGTTTACTATTAAATTCCCATATATTCACTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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