SE3320427

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7892
  • citrus sinensis
  • SE3320427
  • Mutator
  • M66
  • chr8:9267153-9267595
  • TAATTTTAA
  • AGAGTGGGACTATTGGCACCCCTCTAAATATCTCTTAAACTCCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATTTTA                       C    T          -      ----    T            TAAAATATTTTAAAAAATTATTAAATTCTTTTAACACCTCCATCAATGACAAAAATACCCTTAAGTAAAATTTATTGTATAAACCCCATTCTCTAATTTTTATAATTAAAACTCAATTCAACAACCAGATTTCTTCTATTAAAAAAAAA
        AGAGTGGGACTATTGGCACCCCT TAAA ATCTCTTAAA CTCCTT    TTCT AATTAACTCCAT                                                                                                                                                     
        ||||||||||||||||||||||| |||| |||||||||| ||||||    |||| ||||||||||||                                                                                                                                                      
        TCTCACCCTGATAACTGTGGGGA ATTT TGGAGAATTT GGGGAA    ATAA ATATTAAAATTG                                                                                                                                                     
AATTTTAA                       C    T          T      ATTA    A            GAAATAATTTTAATGTATTATCCTGTTAAAGATTAATTTGAGGTAAATTTTCAATTTATTAAAAAATAAAATCTTTAATTTTTCCAATATAAAAAAAAAGTCCACTCCTTAAATGGTGGTTACCGATATTATCTTTCTTTCTTTTGGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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