SE3320428

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7893
  • citrus sinensis
  • SE3320428
  • Mutator
  • M16
  • chr7:27950238-27950377
  • TTTTTTAAA
  • TTTAAAGGAGTCTCCTACGTTACGTTAATCGTAACGTACATCCACACACAACAACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTT          -  --TC                         AT               ATACCCA      G
   TTTAAAGGAG TC    CTACGTTACGTTAATCGTAACGTAC  CCACACACAACAACA       TGGTGG 
   |||||||||| ||    |||||||||||||||||||||||||  |||||||||||||||       |||||| A
   AAATTTTTTC GG    GATGCAATGCAATTAGCATTGCATG  GGTGTGTGTTGTTGT       ATCGCC 
             C  TCAC                         -C               ------C      C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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