SE3320429

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7894
  • citrus sinensis
  • SE3320429
  • Mutator
  • M2
  • chr5:31254411-31254630
  • AAAAGAAAT
  • TGAGTAATGATACAGCCACAAACTCTTGTACAAACTTATTTTGTACAAACTGATGTGGCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAAGAAA                                                             GATAAG           -T      CAC    --CCC   TG
        TGAGTAATGATACAGCCACAAACTCTTGTACAAACTTATTTTGTACAAACTGATGTGGCAT      ATTGGTTGAAT  AAATAT   TTGG     ACA  
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||  ||||||   ||||     |||  A
        ACTCATTACTATGTCGGTGTTTGAGAACATGTTTGAATAAAACATGTTTGACTGCACCGTA      TAACCAACTTA  TTTATA   AATT     TGT  
TAAAGAAA                                                             ATTAAG           CT      TTT    ATTTT   TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3