SE3320434

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7899
  • citrus sinensis
  • SE3320434
  • Mutator
  • M32
  • chr3:10519907-10520320
  • ATATAATTA
  • TAATTAGGGAAATTATTATTCGTATGTCCTAAATTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATA      ---       T    T           AAA    TGTTT        AA     C        A  A        A             T         AT       CAACCACT      -   GCTGTTGTTTGAAAGTTAACGGAACTGTAGCGAATTGACGATTTTACCTTTGAAAATTATCACTTGTATATCCTTA
   TAATTA   GGGAAAT ATTA TCGTATGTCCT   TTTG     TTATCAAA  TACTA AACACTTT AG GTATATCA TCGTCCACCTTAA TTGACAAAA  TATCTGT        AAATCG TTA                                                                            
   ||||||   ||||||| |||| |||||||||||   ||||     ||||||||  ||||| |||||||| || |||||||| ||||||||||||| |||||||||  |||||||        |||||| |||                                                                             
   ATTAAT   CCCTTTA TAGT AGCATATGGGA   AAAT     AATAGTTT  ATGAT TTGTGAAA TC CATATAGT AGTAGGTGGAATT AACTGTTTT  ATAGACG        TATACT CTG                                                                            
         ATA       C    T           ATC    GAGGC        AA     A        A  C        C             T         AC       -ACAAATT      A   CAGTCTTACCATTAAACCCAGAAAAGTATACTATGTTCACTATTAAATTCCCATATATTCACTATTATTCTCTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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