Plant MITE

SE3320437

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7902
citrus sinensis
SE3320437
Mutator
M6
chr5:27787666-27787835
AAAACAATA
GGACTCGACTAGCTTACAGAATCTGTAAGGTACAGACTGCAGCATCAGCCGTTGGAT

Secondary structure and sequence

TSD TIR

5'

3'

AAAACAATA     C A   GCT      A       G T   GA  G A -    -A      G   GTGG   GA   GG   GA
         GGACT G CTA   TACAGA TCTGTAA G ACA  CT C G CATC  GCCGTT GAT    TTG  TGT  AGT  
         ||||| | |||   |||||| ||||||| | |||  || | | ||||  |||||| |||    |||  |||  |||  G
         CCTGG C GAT   ATGTCT AGACATT T TGT  GA G C GTAG  TGGTAG CTA    GAT  ACA  TCA  
ATAACAAAA     A A   ACC      A       G T   -A  G G A    GG      G   -AAA   -A   AG   AA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320437

AAAACAATAGGACTCGACTAGCTTACAGAATCTGTAAGGTACAGACTGCAGCATCAGCCGTTGGATGTGGTTGGATGTGGAGTGAGAAACTGAACAATAGAAAATCGGATGGTGGGATGACGGGAGATGTTTGTTACAGAATCTGTACCATAGACAGGTCCAAAACAATA

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