SE3320439

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7904
  • citrus sinensis
  • SE3320439
  • Mutator
  • M48
  • chr1:1801931-1802420
  • GTTGGTTTT
  • GGGTAATTTTTAACCTACCACCAAATAAATTAATATTTTGTACCGCGTCTCTAAAAAATTTGA

Secondary structure and sequence

TSD    TIR
5'



3'
GTTGGTTTT   T               A           A                C  T      TT   CTTA         AC   C          T   CTCAATTAA    AACGGTGGAGGGGTAAAATTAAAAGTTCATTCTTTAAATTAATTTTAGTGGGAATTCTCTTTATTGCAATTGAAATAAAAATCTTTACAAAATTAAAGGAAAAATAATAGTGGTGACAATGTACATGTAAC
         GGG AATTTTTAACCTACC CCAAATAAATT ATATTTTGTACCGCGT TC AAAAAA  TGA    TTGCACCGC  CCC AATTCTGTTA TTT         GTTT                                                                                                                                   
         ||| ||||||||||||||| ||||||||||| |||||||||||||||| || ||||||  |||    |||||||||  ||| |||||||||| |||         ||||                                                                                                                                   A
         CCC TTAAAAATTGGATGG GGTTTATTTAA TATAAAACGTGGCGCA GG TTTTTT  ACT    AACGTGGCG  GGG TTAAGGCAAT AAA         AATC                                                                                                                                   
TTTTGGTTG   T               -           C                T  T      TT   ACAC         CA   A          T   --------A    AATAAAGATTATCAAGGCAGATTGAAAACTAACCTACTGTTTTTACGGGGAGGTATACTTTTTTATGTTTTAAAAATCGAGTAAATTAAAAAAATTTTTCAAAAATAAAGTTAACGTTATGTTTTTAAAGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End