SE3320441

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7906
  • citrus sinensis
  • SE3320441
  • Mutator
  • M5
  • chr4:17318660-17318818
  • TGTTAATTG
  • TAATTGGGGGGAATCTGTGGTGCAACTGTGGTATCGTGCCACAGTTGCATCCAACCGTTGGATGGCAATGGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TGT       G    ---AT                                     CAA C        G  -A     CCC
   TAATTGG GGGA     CTGTGGTGCAACTGTGGTATCGTGCCACAGTTGCATC   C GTTGGATG CA  TGGAT   
   ||||||| ||||     |||||||||||||||||||||||||||||||||||||   | |||||||| ||  |||||   A
   GTTAATT TCCT     GATGCCACGTTGACACCATGGCACGGTGTCAACGTAG   G CAACCTAC GT  ATCTA   
          G    AGTCC                                     ATC A        -  AA     ACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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