SE3320445

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7910
  • citrus sinensis
  • SE3320445
  • Mutator
  • M5
  • chr2:5912651-5912809
  • CCATCTTTA
  • GGATCAGGCTATGGTGCAACTGTGGTACCGTGCCACAGTTACATCCAGCCGTTGGATGCACTTGAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
  CCATCTTTA   TC  G  A                             A                  ACT      GG
           GGA  AG CT TGGTGCAACTGTGGTACCGTGCCACAGTT CATCCAGCCGTTGGATGC   TGAATT  
           |||  || || ||||||||||||||||||||||||||||| ||||||||||||||||||   ||||||  T
           CCT  TT GA ACCACGTTGACACTATGGCACGGTGTCAA GTAGGTCGGCAACCTACG   ACTTGG  
ATTTCTACCCC   --  G  C                             C                  GTT      GG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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