SE3330451

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7916
  • citrus sinensis
  • SE3330451
  • hAT
  • Hat1
  • chr3:11839142-11839353
  • TATAAATG
  • GCAGTAATGCTACACATCCCAAATTTCTTATCCCAAAAAGTTATCCCAAATGATGTGTCATTAATTGAGTGGTTGATAATTATTTAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATAAATGA                          C                              T    A     G      ----------       -     AATA
         GCAGTAATGCTACACATCCCAAATTT TTATCCCAAAAAGTTATCCCAAATGATGTG CATT ATTGA TGGTTG          ATAATTA TTTAC    
         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| ||||||          ||||||| |||||    T
         TGTTATTACGATGTGTAGGGTTTAAA AATAGGGTTTTTCAATAGGGTTTACTACAC GTAA TAGTT ACCAAC          TGTTAAT AAGTG    
GAGTAAATA                          A                              C    A     A      CACTCTATTA       T     AACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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