Plant MITE

SE3350459

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7924
citrus sinensis
SE3350459
PIF/harbinger
To4
chr7:1885913-1886191
TAA
AGGGTGTGTTTGGAATTGAGGT

Secondary structure and sequence

TSD TIR

5'

3'

TA                      -A     -    -  AAG --  -  ACTGCTGTGGAAAAAAAGTTGTAAGTATGAAACAAAAGTTAGTAATATATGGTAAATGTAAATTTTAAATAATAATTTTGATAAAATTATTAAA
  AGGGTGTGTTTGGAATTGAGGT  TTATA ACTT TT   C  TA CA                                                                                              
  ||||||||||||||||||||||  ||||| |||| ||   |  || ||                                                                                               
  TCCCACGTAAACCTTAACTCCA  CCGTT ACAT GA   A  TT AA                                                                                              
AA                      AC     G    C  --- TT  C  TGTTGTAATTTCACAAACAATTTGTGATTGACGACATTAAATTTTCAATACAACTATACTAAAAAGTGAACATATTACTTTTTAGATAATATAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3350459

TAAGGGTGTGTTTGGAATTGAGGTATTATAACTTTTAAGCTACAACTGCTGTGGAAAAAAAGTTGTAAGTATGAAACAAAAGTTAGTAATATATGGTAAATGTAAATTTTAAATAATAATTTTGATAAAATTATTAAAGATATAATAGATTTTTCATTATACAAGTGAAAAATCATATCAACATAACTTTTAAATTACAGCAGTTAGTGTTTAACAAACACTTTAATGTTGTAACTTTTAAGCTACAGTTGCCCAACCTCAATTCCAAATGCACCCTAA

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