SE3320466

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7931
  • citrus sinensis
  • SE3320466
  • Mutator
  • M57
  • chr2:23553576-23554286
  • TTTATATTA
  • TATATTAGGGAAAATATCCACCGTCCACCTATTTTTTACACCTTTTTCAAAAATACACAATTCCTTCATTTTTTAGCTGGAATCCACCTAAAGTTACATTTTTTTTCACTTTTCCACTTCCGTTTGGAATCCGTTAAGAAAACTAACGGAAACTTAATAAAATGACCATTTTACCCCCAAAACGAAAATTACAATTTCACCTTAAAAAATACCAAAAATAATAAGATT

Secondary structure and sequence

TSD    TIR
5'



3'
 TT    TT                                                                    A                                                                             -C    T                                 C                A   C         A     -      -   ATATCATTATTGGTACTTTAATGAAGTACAAAAAAATCTTAACTACTAGAGATTATAACTCAATTAATAATAAAACTCTACTTATCTTAAATTCAATTGATGATTTGCGAGATTG
   TATA  AGGGAAAATATCCACCGTCCACCTATTTTTTACACCTTTTTCAAAAATACACAATTCCTTCATTTTTT GCTGGAATCCACCTAAAGTTACATTTTTTTTCACTTTTCCACTTCCGTTTGGAATCCGTTAAGAAAACTAACGGAAA  TTAA AAAATGACCATTTTACCCCCAAAACGAAAATTA AATTTCACCTTAAAAA TAC AAAAATAAT AGATT TAATGA TGA                                                                                                                   
   ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| ||||| |||||| |||                                                                                                                   G
   ATAT  TCCCTTTTATAGGTGGCAGGTGGATAAAAAATGTGGAAAAAGTTTTTATGTGTTAAGGAAGTAAAAAA CGACCTTAGGTGGGTTTTAATGTAAAAAAAAGTGAAAAGGTGAAGGCAAACCTTAGGCAATTCTTTTGATTGCCTTT  AATT TTTTACTGGTAAAATGGGGGTTTTGCTTTTAAT TTAAAGTGGAATTTTT ATG TTTTTATTA TCTAA TTAGAT AAT                                                                                                                   
ATT    -T                                                                    C                                                                             AA    -                                 A                A   T         A     T      T   AAAAGGGGTAGCCAGTTATTTATTTAATTAAGGTATTGGTAGTTTACGTACAAAAAAAAAAAATTTATATAGACATTAATCTTACGATTTAATATTGTCATCATAATTTTTATCA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End