SE3320468

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7933
  • citrus sinensis
  • SE3320468
  • Mutator
  • M66
  • chr8:9267153-9267595
  • TTAAAATTA
  • AGAGTGGGACTATTGACACCCCTGTAAAAACCTCTTAAAACCCCTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAAATT               A       G    AAC        A C            TTATAATTTTAACCTTTATTAAAATTACATAATAGGACAATTTCTAATTAAACTCCATTTAAAAGTTAAATAATTTTTTATTTTAGAAATTAAAAAGGTTATATTTTTTTTTCAGGTGAGGAATTTACCACCAATGGCTATAATAGAAAGAAAGAAAACC
        AGAGTGGGACTATTG CACCCCT TAAA   CTCTTAAA C CCTTTAATTATT                                                                                                                                                                
        ||||||||||||||| ||||||| ||||   |||||||| | ||||||||||||                                                                                                                                                                 
        TCTCACCCTGATAAC GTGGGGA ATTT   GAGAATTT G GGAAAAGAATTA                                                                                                                                                                
ATTAAAAT               C       G    ATA        - A            ATTGAGGTAATTTTATAAAATTTTTTAATAATTTAAGAAAATTGTGGAGGTAGTTACTGTTTTTATGGGAATTCATTTTAAATAACATATTTGGGGTAAGAGATTAAAAATATTAATTTTGAGTTAAGTTGTTGGTCTAAAGAAGATAATTTTTTTTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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