SE3320470

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7935
  • citrus sinensis
  • SE3320470
  • Mutator
  • M62
  • chr3:23224668-23225187
  • TAAACCTTA
  • TTAGAGTTGGACTATCGGCACCCCTCTAAAATCCTTTTAAAACCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAACC               C       C        C     A      -------------C      GTTACAATTACATTTAAAGACAAATACTATAATATATCTCAAATTTATTTTATTTCACTTCAAACTTGTATTTTCTCTCTTAAAAGAAAAATCGTCAAACTCACACATGTAATTTTTTTCTCAAATTATCTATAAATTTTTCTTCAATTATTAAGACAATCTATTGATAATAAACAAAACACATTCTGACAAAAT
      TTAGAGTTGGACTAT GGCACCC TCTAAAAT CTTTT AAACCT              CCTTAT                                                                                                                                                                                                   
      ||||||||||||||| ||||||| |||||||| ||||| ||||||              ||||||                                                                                                                                                                                                   T
      AATCTCAATCTGATA CCGTGGG AGGTTTTA GAAGA TTTGGG              GAATCG                                                                                                                                                                                                   
ATTCCA               A       C        A     C      AAAAAATTTATTAC      ACTTATGATTTTTATAGGAATAAAAATTTATTTGTGTAAATTAAATACTTAAAAAATTAAAAGATAATAAAAGAGTGAGGAGTGTTTGTTTAAAAATACCCACTATTTGAAGAAGTATTTTTAGTTAATTAATTTATTTTATAGACATTCTAATACTATATTTTTTAAAATAATACTCGGTATTTTTTCTGTATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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