SE3320485

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7950
  • citrus sinensis
  • SE3320485
  • Mutator
  • M70
  • chrUn:2625656-2626118
  • TAGTTAGAA
  • AGGGTTAATTCCGTCTTGCCCCCAATTGTTTCAACATATTCCATCGCGCACTCAAATGTTTCAACAATGTTCA

Secondary structure and sequence

TSD    TIR
5'



3'
TAGTTAGA       A        T        T G      C  A       GC          G        ATG    ATCCA       A               AT     -C      TCAA        ----  TAGAAGTTCATGCCCTAAATATTATTTGATAATGATAAATTAAATTTATTTTATAAATTAATTGATGGGATTATTATTAATTATTTTTTATTA
        AGGGTTA TTCCGTCT GCCCCCAA T TTTCAA AT TTCCATC  GCACTCAAAT TTTCAACA   TTCA     CACCCAA TCCGTTAATTTGACC  TTATT  TAACGG    AGGGCAAA    TT                                                                                             
        ||||||| |||||||| |||||||| | |||||| || |||||||  |||||||||| ||||||||   ||||     ||||||| |||||||||||||||  |||||  ||||||    ||||||||    ||                                                                                             A
        TCCCAAT AAGGTGGA TGGGGGTT A AAAGTT TA AAGGTGG  CGTGGGTTTG AAAGTTGT   AAGT     GTGGGTT AGGCAATTAAACTGG  AATAA  ATTGCC    GATAAACT    AT                                                                                             
AAGATTGA       A        T        T G      A  A       AA          A        AAA    GACCC       A               -C     AA      --TC        TTCA  TACTTTATAGACTTTATGGGGAATAGAACTTAATCTTTTCTTAATTTACTCTATTTTACAATTAGGTTATTAATTATAAATGTAATTTTTAAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End