SE3320487

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7952
  • citrus sinensis
  • SE3320487
  • Mutator
  • M72
  • chr4:13324882-13325644
  • TTTTCATTT
  • GGAAAATTATCATTGTACCACTTTTCTTTTGTTTTATTTTCATTTAATTATTATAAAACTTTAACATGTTCTTTATATCACATTTTTTTAAAAATTTGTATCAATTAATCACTTTTTCACTAACACCCTTAAATAATTTAAATAAAATAATAATTTTATCCCTAAATAAATTAAAATATCATTTTATTTTTAAAAAATTTTGAAAATAAAAAATTATAGTTATAAAAATACCCCTAAATTTAATAAAGA

Secondary structure and sequence

TSD    TIR
5'



3'
TTTTCATTT  A               C      C           T                    C           C   A      A       AA          C     A        T  C       C                                                T  C          TA    A         --T                                          -AATA  TCCCAAAATCACAATTTTTATTTTTTAATAAAAAATTATAATTATAAAAAAATTACAAAATTTTAGGATTTAATAGAAATCCCCTAAATTAATAAAATTTTGGGATTAATAAATAA
         GG AAATTATCATTGTAC ACTTTT TTTTGTTTTAT TTCATTTAATTATTATAAAA TTTAACATGTT TTT TATCAC TTTTTTT  AAATTTGTAT AATTA TCACTTTT CA TAACACC TTAAATAATTTAAATAAAATAATAATTTTATCCCTAAATAAATTAAAA AT ATTTTATTTT  AAAA TTTTGAAAA   AAAAAATTATAGTTATAAAAATACCCCTAAATTTAATAAAGA     AA                                                                                                                    
         || ||||||||||||||| |||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||| |||||| |||||||  |||||||||| ||||| |||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||  |||| |||||||||   ||||||||||||||||||||||||||||||||||||||||||     ||                                                                                                                     
         CC TTTAATAGTAACATG TGGAAA AAAATAAAATA AAGTAAGTTGGTGGTATTTT AGATTGTATAA AAA GTGGTG AAAGAAA  TTTAAACATA TTAAT AGTGAAAA GT ATTGTGG AATTTATTAAATTTGTTTTATTATTAAAATAGGGATTTATTTAATTTT TG TAAAATAGAA  TTTT AAAATTTTT   TTTTTTAATATTAATATTTTTATGGGGATTTAAATTATTTTT     AG                                                                                                                    
TTTACTTTT  C               C      A           T                    A           A   C      G       AA          A     C        C  A       T                                                C  A          TA    C         TAT                                          ATTTA  TTTTATCTCCACGAGTCAATAAAAATATTTTAAATCTAAAACATTTTAAAATTTTATTTTACTTAAATAAAATAATTTTTAATATTAAACTGTTTTAAAATAATTTTATTGACTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End