SE3320488

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7953
  • citrus sinensis
  • SE3320488
  • Mutator
  • M68
  • chrUn:49440035-49440762
  • TTAATTTTA
  • AGGGAGATTGCCACTTTCCCCCTTACAGTAATCAACATATATTATTTTTCCCCTTCTTTTTTTA

Secondary structure and sequence

TSD    TIR
5'



3'
TTAATTTT    A                           C              T       -  T      TAATAG      A     ACA                                C      CC                       G        C         T               TAAAACATTA                            A                    ----     A  C                AT                  ATAAGAAAA      GTAAAATGATAAAAAATTATTATAAGAAAACTTGAATGACAAATAAAAATTTA
        AGGG GATTGCCACTTTCCCCCTTACAGTAAT AACATATATTATTT TCCCCTT CT TTTTTA      CCAAAA CCCCC   ATAATATAAGTTTATAATATTACCCTTATTTT AACTAC  TTTTATTTATATTTATTATAAAT AAATAAAT ACATGAATA AAACTAAATAAAAAA          AAAATAAGAAATATATGTTTTGATATGA CAAAAAAATTAATAATAAAA    TTTTT TA TTATTTATTTTGTGAA  TTTTCTTATAATAAATAT         TTATTA                                                     
        |||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| || ||||||      |||||| |||||   |||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||          |||||||||||||||||||||||||||| ||||||||||||||||||||    ||||| || ||||||||||||||||  ||||||||||||||||||         ||||||                                                      
        TCCC CTAACGGTGAAAGGGGGGATGTCATTA TTGTATATGGTAAA GGGGGAA GA AAAAAT      GGTTTT GGGGG   TGTTGTATTCAAATATTATAATGGGAATAAAA TTGATG  AAAATAAATGTAAATAATATTTA TTTATTTA TGTACTTAT TTTGATTTATTTTTT          TTTTGTTCTTTATATACAAAACTATACT GTTTTTTTAATTGTTATTTT    AAGAA AT AATAAATAAAACACTT  AAAAGAATATTATTTGTA         TTATAA                                                     
ATTTTAAT    C                           A              T       A  C      TTACCG      A     -AC                                A      AT                       A        A         C               TAATTCATAA                            C                    TAAA     C  T                GT                  ----AAACA      AATTTTAATTTACATTTTTCATATCCATTTTATAAAATAATAAATAGAATATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End