SE3320489

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7954
  • citrus sinensis
  • SE3320489
  • Mutator
  • M73
  • chr4:15121935-15122677
  • ATTTTTCTC
  • GGGTGTGGATATTTCCACCCCA

Secondary structure and sequence

TSD    TIR
5'



3'
ATTTTTCTC     TG               CCAT      A      C    -CCTTCAT     A            T          -CAT      A       AT  TA        TAA               -ATTCTT  A          --CTT     GTC      -CAAT     A   TT        GT    G       T   T   C  A    C        TA    -TA      TTACC       ATA    TT  TGT --     T   TTAGACATTTAGTTTTATGTTTTATAATCTAATATGCTTTATATAAAATTTAATAATTTTCAATACTTCAAATGTCCTAATTACATC
         GGGTG  GATATTTCCACCCCA    TTTTAT AACCCA CCCA        AAAAT ATTACAATAAGT CACATTATTT    AGAATT CAAATTA  AA  AGTTTGAA   TTAATTAATTAAATC       GT AATTTTTTTT     ACTTT   TTTTAA     TTTTA CAA  TAAGGTTG  TTAA ATAAGTT AAT TAA TA TTTA CCTTATAA  TAAA   ACCAAA     CTAAGAA   TATA  AT   A  ACTAA TGT                                                                                       
         |||||  |||||||||||||||    |||||| |||||| ||||        ||||| |||||||||||| ||||||||||    |||||| |||||||  ||  ||||||||   |||||||||||||||       || ||||||||||     |||||   ||||||     ||||| |||  ||||||||  |||| ||||||| ||| ||| || |||| ||||||||  ||||   ||||||     |||||||   ||||  ||   |  ||||| |||                                                                                       C
         CCCAC  CTATAAAGGTGGGGT    AAAATA TTGGGT GGGT        TTTTA TAATGTTGTTCA GTGTAATAAA    TTTTAA GTTTAAT  TT  TTAAATTT   AATTGGTTAATTTAG       TA TTAAAAAAAA     TGAAA   AAAATT     AAAAT GTT  ATTCCAAC  AATT TATTTAA TTA ATT AT GGAT GGAGTATT  ATTT   TGGTTT     GATTTTT   ATGA  AA   T  AAATT ATT                                                                                       
CTCTTTTTA     CA               ATTT      A      A    TAAAATTT     A            C          AATT      -       CC  CC        TAA               GTATAAT  A          TACTC     --A      AATAT     A   --        AA    G       -   T   A  A    T        CC    TCA      TTATA       -AA    --  --- TG     -   TAAAAATATGTTAAAAAAAAATGTATAAAATAACTACATATTCATCACGAAAAAATCATACTAATAATTATAAGGTGATTTGATTGC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End