Plant MITE

SE3320490

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7955
citrus sinensis
SE3320490
Mutator
M51
chr4:4462967-4463664
AAATTATCA
GGGAAATTTACAACCGTCCACCTGTTTGTTTTGTCTTTTTCAAAAATACACAAACACTTTATTTTTTTTCAGCGCGCCACCTGAAGTTCACTTTTTGTTGCATTCTTCCACTTCCGTCTAATTTCCGTTAGCAAATTTAACGGAATGACCTTTTTACCCCTCAAAATTACAATTTAACCCAAAATAAATAGAAATTGGAGATAAATTGGATGGATTTAATTTTTTTTCAAAGGTGGATGCTAGAAATTGGAGGAAAATAATGTTTGTTGCTTGCTAAATTTAGAAAATTTGTATTTATTTTTTTGGGGGAAAATAGTGTTTAT

Secondary structure and sequence

TSD TIR

5'

3'

AAATTATCA            AC                                              A                                           C                          CAA          -----------                                             A                      GA     TT                                      A                                             --        T    TT   -TACTTG   GA
         GGGAAATTTACA  CGTCCACCTGTTTGTTTTGTCTTTTTCAAAAATACACAAACACTTT TTTTTTTTCAGCGCGCCACCTGAAGTTCACTTTTTGTTGCATT TTCCACTTCCGTCTAATTTCCGTTAG   ATTTAACGGA           ATGACCTTTTTACCCCTCAAAATTACAATTTAACCCAAAATAAAT GAAATTGGAGATAAATTGGATG  TTTAA  TTTTTTCAAAGGTGGATGCTAGAAATTGGAGGAAAATA TGTTTGTTGCTTGCTAAATTTAGAAAATTTGTATTTATTTTTTTG  GGGGAAAA AGTG  TAT       CTA  
         ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||||||           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||  |||       |||   
         CCCTTTAAATGT  GCAGGTGGACAAACAAAACGGAAAAAGTTTTTATGTGTTTGTGAAA AAAAAAAAGTCGCGCGGTGGACTTCAAGTGAAAAACAACGTAA AAGGTGAAGGCAGATTAAAGGCAATC   TAAATTGCCT           TACTGGAAAAATGGGGAGTTTTAATGTTAAATTGGGTTTTATTTA CTTTAACCTCTATTTAACCTAC  AAATT  AAAAAAGTTTCCACCTACGATCTTTAACCTCCTTTTAT ACAAACAACGAACGATTTAAATCTTTTAAACATAAATAAAAAAAC  TCTCTTTT TTAT  ATG       GAT  
ACTATTAAA            GA                                              A                                           A                          ATC          TACAATTGCTT                                             C                      AT     -T                                      C                                             TT        -    TT   TTTAAAA   TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320490

AAATTATCAGGGAAATTTACAACCGTCCACCTGTTTGTTTTGTCTTTTTCAAAAATACACAAACACTTTATTTTTTTTCAGCGCGCCACCTGAAGTTCACTTTTTGTTGCATTCTTCCACTTCCGTCTAATTTCCGTTAGCAAATTTAACGGAATGACCTTTTTACCCCTCAAAATTACAATTTAACCCAAAATAAATAGAAATTGGAGATAAATTGGATGGATTTAATTTTTTTTCAAAGGTGGATGCTAGAAATTGGAGGAAAATAATGTTTGTTGCTTGCTAAATTTAGAAAATTTGTATTTATTTTTTTGGGGGAAAATAGTGTTTATTACTTGCTAGATTTAGAAAATTTGTATTTATTTTTTCTCTTTCAAAAAAATAAATACAAATTTTCTAAATTTAGCAAGCAACAAACACTATTTTCCTCCAATTTCTAGCATCCACCTTTGAAAAAATTTAAATACATCCAATTTATCTCCAATTTCCATTTATTTTGGGTTAAATTGTAATTTTGAGGGGTAAAAAGGTCATTTCGTTAACATTCCGTTAAATCTACTAACGGAAATTAGACGGAAGTGGAAAAATGCAACAAAAAGTGAACTTCAGGTGGCGCGCTGAAAAAAAAAAAAGTGTTTGTGTATTTTTGAAAAAGGCAAAACAAACAGGTGGACGAGTGTAAATTTCCCAAATTATCA

Copy Cancel