SE3320515

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7980
  • citrus sinensis
  • SE3320515
  • Mutator
  • M83
  • chr3:21546523-21547237
  • TATCCCAAC
  • GAGTAAAAGCTCAGTTAGTCCATGTATTTTAATATTAGTATCCATTTAGTCCCTATATTTTTTAAAATGCCTCGAAACATTCATGCCGTTAAAGTATTGATACCTCCACCGTTACTTTTTATTTCTTTTGGCTTACTTTTACAATATTACCCTTTTATAATAATTTTTTGTTTGGACATTAATAAAAAGAAAATAATTAAATTACCAATTTAACCCTAAAAAAATTATATTAATTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TATCCCAAC A          AG      CA                 A  CA                  T                                        C  -C       C         C                                            -                                          A      -------                    AATTGTCAAA    A  --     A    -   TTTCTTTTAGCTTACTTTTACAATATTACCCTTTTATAATAATTTTTTTGTTTGGACATTAATAAAAAGAAAATAATTAA
         G GTAAAAGCTC  TTAGTC  TGTATTTTAATATTAGT TC  TTTAGTCCCTATATTTTT AAAATGCCTCGAAACATTCATGCCGTTAAAGTATTGATAC TC  ACCGTTA TTTTTATTT TTTTGGCTTACTTTTACAATATTACCCTTTTATAATAATTTTTT GTTTGGACATTAATAAAAAGAAAATAATTAAATTACCAATTT ACCCTA       AAAAAATTATATTAATTTTT          AATT AA  TTATT CTTT TTA                                                                                
         | ||||||||||  ||||||  ||||||||||||||||| ||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||  ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||       ||||||||||||||||||||          |||| ||  ||||| |||| |||                                                                                A
         C CATTTTCGGG  AATCAG  ATATAAAATTATAATCA AG  AAATCAGGGATATAAAAA TTTTATGGAGCTTTGTAAGTACGGCAATTTCATAACTATG AG  TGGCAAT AAAAATAAA AAAACCGAATGAAAATGTTATAATGGGAAAATATTATTAAAAAA CAAACCTGTAATTATTTTTCTTTTATTAATTTAATGGTTAAA TGGGAT       TTTTTTAATATAATTAAAAA          AACG TT  TGGTA ACGT TGA                                                                                
CAACCCTAT C          AA      AG                 C  AC                  T                                        -  TA       A         A                                            A                                          G      CTTTTAT                    ----------    -  CG     A    G   ACCATCAAACGTATGTTAAAAACTGTTAAATTAAAAAATGTTAATTTTTAATTATATAAAAAAATCCCAATTTAACCATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End