SE3320516

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7981
  • citrus sinensis
  • SE3320516
  • Mutator
  • M57
  • chrUn:15075723-15076224
  • ATAAACATA
  • GGGTAATTATCCACCGACCACCTGTTTTTTTTAATTTTTTCAAAAATACACACATCCTTTTTTTTCTTG

Secondary structure and sequence

TSD    TIR
5'



3'
ATAAACATA                     C         TA                   C  C   TT   -TC   GCAAC       C        AAATT    T    GA  C         ATAAC       ----      --    --  CA    --------- AGGGTAAAAT       TTACAATGACATTGTTTGAAGACATAAGTGGACATGTGCAAAACAATATAACTTCAAGTAGAGTTCAATCATAA
         GGGTAATTATCCACCGACCAC TGTTTTTTT  ATTTTTTCAAAAATACACA AT CTT  TTT   TTG     GCTCCAC TGAAGTTA     TTTT CACT  TC ACTTCCGTT     ACTGTTA    GAACTT  TGTT  GA  TTAT         A          TGTCATT                                                                          
         ||||||||||||||||||||| |||||||||  ||||||||||||||||||| || |||  |||   |||     ||||||| ||||||||     |||| ||||  || |||||||||     |||||||    ||||||  ||||  ||  ||||         |          |||||||                                                                           
         CCCGTTAATAGGTGGCTGGTG ATAAAAAAG  TAAAAAAGTTTTTATGTGT TA GAA  AAA   AAC     TGAGGTG GTTTTAAT     AAAA GTGG  AG TGAAGGCAG     TGATAAT    TTGATT  CTTA  AT  ACAT         A          ATGGGGG                                                                          
ATACAAATA                     A         TG                   -  A   TT   CAA   -AACT       A        ATAAT    C    AC  A         AAGTT       TCTC      GC    TA  --    TTACTAAAA ----------       TTTACATTTTTCCGTTAATAGGTGGCTGGTAGAAAAAAGAGTAAAAAAACTTTTTATGTGTTAAGAATTAAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End