SE3320518

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7983
  • citrus sinensis
  • SE3320518
  • Mutator
  • M20
  • chr5:27971833-27972021
  • TTAAAAGTG
  • AAGTGGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
   TTAA   T    TGTT               CTCTAACG                  A                 A       AAGGGAAA  GG
       AAG GGAG    GCTATTTACCCCGAA        CTGAATTTGTGCCCCGAA GTCAAAACGCACCGTTT GTTTGGT        GT  
       ||| ||||    |||||||||||||||        |||||||||||||||||| ||||||||||||||||| |||||||        ||  A
       TTC CCTT    CGATAAATGGGGCTT        GGCTTAAACGCGGGGCTT CGGTTTTGCGTGGCAAA CAAACCA        CG  
GTGAAAA   -    --TT               AAAACCAG                  -                 C       -AAGTAAA  AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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