SE3330519

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7984
  • citrus sinensis
  • SE3330519
  • hAT
  • Hat2
  • chr2:24762094-24762476
  • GATACCAC
  • CACTAGGGATGGCAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
GATAC  -      A       TTT    GAT              CGGGATCCCATCCCATTTGGGACGGGATTGGGACATATTTTTGTCCCATAAAAAAATTTGAGACGGGATTGGGATATTTTTTTATCCCAATTACATATGCGGGACGGGAGTGAGATTGACAAATTCCGTCCCATCTCGTCTCATTACC
     CA CTAGGG TGGCAAT   TCCC   GGGATGGGATCTTG                                                                                                                                                    
     || |||||| |||||||   ||||   ||||||||||||||                                                                                                                                                     
     GT GATCCC ACCGTTA   TGCC   CTACCCTACTCTAA                                                                                                                                                    
 CACC  A      A       CTC    ---              ATGGTTAGGGTCAGGGTAGGGCATATACGTTTACCCTACTTTTTTGCAGGGTTAGGGCAGGGATATAAAAAAAACCCTGTTTTTATACAAGGTTAGGGCAGGGTTTTCTCTACCCTAGGACGCTAACCTTTTAAAAGGTAAGAATTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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