Plant MITE

SE3320525

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7990
citrus sinensis
SE3320525
Mutator
M57
chr8:13507493-13507842
TTTCAAATA
AGGGCAATTATCCACCGTCTACCTGTTTTTTTCACTTTTTCAAAAATACATAATTCTTAATTTTTTTTGCTGAGTTCCACTTGAAGTTATATTTTTTTGCCCATGTCCACTGCTGTCTTCAAACCGTTAA

Secondary structure and sequence

TSD TIR

5'

3'

TTTCAAAT    C       C          T        -  C     C      A       C                             G            -  C A      C                    ----------   TTTGCTGAGGTCATAAGGGTATAATGGT
        AGGG AATTATC ACCGTCTACC GTTTTTTT CA TTTTT AAAAAT CATAATT TTAATTTTTTTTGCTGAGTTCCACTTGAA TTATATTTTTTT GC C TGTCCA TGCTGTCTTCAAACCGTTAA          GAC                            
        |||| ||||||| |||||||||| |||||||| || ||||| |||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| || | |||||| ||||||||||||||||||||          |||                             
        TCCC TTAATAG TGGCAGGTGG CAAAAAAA GT AAAAA TTTTTA GTATTAA AATTAAAAAAAACGACTCGAGGTGAACTT AATATAAAAAAA CG G ATAGGT ATGGCAGAAGTTTGGCAATT          CCT                            
ATAAACTT    A       A          T        T  A     T      A       A                             A            A  T A      A                    TTTTTGATTG   TATAACAGGTTTAATATATCCACTTTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320525

TTTCAAATAGGGCAATTATCCACCGTCTACCTGTTTTTTTCACTTTTTCAAAAATACATAATTCTTAATTTTTTTTGCTGAGTTCCACTTGAAGTTATATTTTTTTGCCCATGTCCACTGCTGTCTTCAAACCGTTAAGACTTTGCTGAGGTCATAAGGGTATAATGGTAATTTCACCTATATAATTTGGACAATATTCCGTTAGTTTTTTTAACGGTTTGAAGACGGTAATGGATAAGTGCAAAAAAAATATAAATTCAAGTGGAGCTCAGCAAAAAAAATTAAAAATTATGAATTTTTTAAAAAATGTAAAAAAACTGGTGGACGGTAGATAATTACCCTTTCAAATA

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