Plant MITE

SE3320527

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7992
citrus sinensis
SE3320527
Mutator
M8
chr8:20364051-20364249
TGAATTAAT
AATTAATGG

Secondary structure and sequence

TSD TIR

5'

3'

 TG      T  TTTTA     G    ATG         C             -    AA              C           T     --    GATA
   AATTAA GG     GTTAT TTAC   ATCATGTAA ATACATGATTCTT CATA  CGTTGGATGAAAAT CAACAGTTGTG AAATA  AGAT    
   |||||| ||     ||||| ||||   ||||||||| ||||||||||||| ||||  |||||||||||||| ||||||||||| |||||  ||||     
   TTAATT CC     CAATA AATG   TAGTACATT TATGTACTAAGAA GTGT  GCAACCTACTTTTA GTTGTCAATAT TTTAT  TCTA    
TTA      -  TCTAA     G    CAA         C             A    CA              A           C     AT    ATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320527

TGAATTAATGGTTTTAGTTATGTTACATGATCATGTAACATACATGATTCTTCATAAACGTTGGATGAAAATCCAACAGTTGTGTAAATAAGATGATATATAATCTTATATTTCTATAACTGTTGAATTTTCATCCAACGACTGTGAAAGAATCATGTATCTTACATGATAACGTAAGATAACAATCTCCTTAATTATT

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