SE3330532

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7997
  • citrus sinensis
  • SE3330532
  • hAT
  • Hat5
  • chr5:19571549-19572336
  • ATTCTTAC
  • TAGGGGTGGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTCTTAC            --     CGGTTCGGTTCGGATCGAAATTAAGTAGAACCGATTTAAATCGGTTATTTTATAAAAAGAACTGAATAAGAACCGAACTCAAACGGATCTTTTCAGATCGGTTCGGTATGGCTCGGTTTTTTCGGTTCTAGGCCTATTAGGCCTATTTTGAATTTTCAAATTTTTAGCCCATTGGGCCTCATAAATGTAATAATTTTTTTCAACAATTAGTTCATCATAATTTCATTACAAATATTAACAATAAATACAAAGTATTCAAAACACATTTTATCACTAATATCTTACTAACTACTAATAAGGTACTCACAAAATATAAAATATTAAAATTTCAAAATACATAACCAAACTCCAATACTCCATCTACATAA
        TAGGGGTGGGCA  CGGTT                                                                                                                                                                                                                                                                                                                                                                                
        ||||||||||||  |||||                                                                                                                                                                                                                                                                                                                                                                                 
        ATCCCCACCCGT  TTTTG                                                                                                                                                                                                                                                                                                                                                                                
CATTCTTA            TT     GCACCAGAATTTTTATGGCTTGGCTTGGCCGCCAAAAAAGATTAAGCCTAGCTAAAAATAAAAAATTTTTTGGCTTTATATAGTAAACATTTTTTTTGGCTTTACAGCCAAGCCATAAGCCAAGTGAGTCGACTTGGCTTTTTGGCTTGGCTTTTTGGCTTAATTAAAATCTAAAATAAGTTTAGTTGTACACAATTTAAAAAAAAATATCTAGGTTTATAACTCAACCTTTTACGGATTTCAACTACAACTATAACTACTTCTACCCTCTTACAACAACCGCAAACAAAGATTTAAAAGAAAAATAAAACACAACATTCAACATTAACAACAATAAAAATAAACAGAAATGTTGTAATACTAATACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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