SE3350544

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8009
  • citrus sinensis
  • SE3350544
  • PIF/harbinger
  • To4
  • chr6:2246457-2246735
  • TTG
  • GGGGTGCGTTTGGAATTGAGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             A        ------         TTTAAGCTACAGTTGCTGTGAAAAAAAAGCTGTAATTATGAAACTAAAGTTAATAATATATAATAAATATAAATTTTAAATAATAATTTTGATAAAATTATTA
  GGGGTGCGTTTGG ATTGAGGT      GCTGTAGCT                                                                                                       
  ||||||||||||| ||||||||      |||||||||                                                                                                       A
  TCCCACGCAAACC TAACTCCA      CGACATCGA                                                                                                       
GT             C        ACCCGT         ATTTTCGATGTCGTAATTTCACAAACCATTTGTGATCGACGACATCGAAAATTCGATACAACTATACTAAAAAGTGAACATATTATATTTTAAATAATATAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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