SE3350545

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8010
  • citrus sinensis
  • SE3350545
  • PIF/harbinger
  • To4
  • chrUn:44934860-44935138
  • TAA
  • AGGGTGCGTTTGGGATTGAGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                      TGGGC         TTAAAAGCTACAGCACTAAAGTGTTTGGTAAACACTAGCTGCTGTAACTTTTAAGCTATGTTGATATAATTTTTCACTTGTATAATATAAAATTTATTATATCT
  AGGGTGCGTTTGGGATTGAGGT     AGCTGTAAC                                                                                                        
  ||||||||||||||||||||||     |||||||||                                                                                                         
  TCCCACGCAAACCCTAACTCCA     CGACATCGA                                                                                                        
AA                      -----         AAATTCGATGTCGACGACACTTTTTTTTCGACATTAATACTTTATTTTCAATTATTATATATCATTTATATTTAAAATTTATTATTAAAATAGTTTTAATAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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