SE3350546

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8011
  • citrus sinensis
  • SE3350546
  • PIF/harbinger
  • To4
  • chrUn:47547151-47547431
  • TAA
  • GGGTGTATTTGGCATTGAGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAA  -    A     C        ------       ---  TTTAAGTTACAGTTGTTGTGGAAAAAAAAAGTTATAACTATGAAACAAAAGTTAGTAATATATAGTAAATATAAATTTTAAATAATAATTTTGATAAAATTAT
   GG GTGT TTTGG ATTGAGGT      GCTGTAG   CT                                                                                                       
   || |||| ||||| ||||||||      |||||||   ||                                                                                                        
   TC CACA AAACC TAATTCCA      CGACATC   TT                                                                                                       
 AA  A    C     C        ACCTGT       AAA  TTCAATGCCGTGATTTCACAAACCATTTGTGATCGCCGATATTGAACCTTCAATACAACTATATTAAAAAGTGAACATATTACTTTTTAAATAATATATAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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