SE3350547

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8012
  • citrus sinensis
  • SE3350547
  • PIF/harbinger
  • To4
  • chr8:7937217-7937495
  • TAT
  • GGGTGCGTTTGGGATTGAGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAT                     TGGGCA          AA          -----------ACTAA       GGTAAACACTAGCTACTGTAATTTTTAAATTATGTTGATATGATTTTTTACTTGTATAATACAAAATTTATTA
   GGGTGCGTTTGGGATTGAGGT      GTTGTAGCTT  AAGCTACAGC                AGTGTTT                                                                         
   |||||||||||||||||||||      ||||||||||  ||||||||||                |||||||                                                                          
   CCCACGCAAACCCTAACTCTA      CGACATCGAA  TTCGATGTCG                GACATTA                                                                         
TAT                     ------          AA          ACGACACTTTTTTTTC       ATACTTTGTTTTCAATTATTATATATCATTTATATTTAAAATTTATTATTAAAACTATTTTAATAATTTCTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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