SE3350550

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8015
  • citrus sinensis
  • SE3350550
  • PIF/harbinger
  • To4
  • chr3:20667666-20667933
  • TTA
  • AGGTTATGTTTGGGATTGAGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   T                  ---------   -        TATTGTGGAGAAAAATCTATAACTATAAAACAAAATTTAATAATATGTAGTAAATATAAATTTTAAATAATAATTTTGACAAAATTATTAAACA
  AGG TATGTTTGGGATTGAGGT         GTT ATATCTTC                                                                                              
  ||| ||||||||||||||||||         ||| ||||||||                                                                                               
  TCC ATGCAAACCCTAACTCCA         CAT GAAAATTC                                                                                              
AT   C                  ATCTGTCAA   T        AATGTCATGATTTCACAAACTATTTATGATTAATGACATTGAATTTTCTATGCAATTATACTAAAAAATGAATATATTATCTTTTATATAATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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